Here I was mentioning some products.
Generating directly the GraphML XML in Java is a pain. Too awkward.
Here an example of how to generate a basic graph in Java using yFiles of yWorks.
It looks really professional and impressive, but the licence is very expensive.
http://en.wikipedia.org/wiki/YEd
http://en.wikipedia.org/wiki/GraphML
Other interesting products:
http://www.jgrapht.org/
http://www.graphviz.org/Gallery.php
http://www2.research.att.com/~john/Grappa/
As by comments, Cytoscape seems also very professionally done.
Wednesday, August 10, 2011
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Cytoscape (http://cytoscapeweb.cytoscape.org/demo) has very decent Graphml support.
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